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Pumpkin Cream Cheese Muffins Recipe

I’m so excited to share this Pumpkin Cream Cheese Muffins Recipe with you! These muffins combine the warm, cozy flavors of pumpkin spice with a luscious cream cheese filling that feels like a little surprise in every bite. Whether you’re baking for a weekend brunch or an autumn gathering, these muffins are a total crowd-pleaser — soft, moist, and deliciously irresistible.

What I love most about this Pumpkin Cream Cheese Muffins Recipe is how it elevates a simple pumpkin muffin into something extra special without making things complicated. The streusel topping adds that perfect hint of crunch, and the cream cheese center gives you a creamy texture contrast that keeps me coming back for more. Trust me, once you try these, you’ll want to keep the recipe on hand all fall long.

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Why This Recipe Works

  • Cream Cheese Filling: Adds a creamy, tangy surprise right in the heart of each muffin.
  • Perfect Pumpkin Spice Blend: Balances warm spices that bring that familiar autumn flavor to life.
  • Moist, Buttery Muffin Base: Using both butter and pumpkin puree keeps muffins tender and flavorful.
  • Crunchy Streusel Topping: Gives a delightful texture contrast and a touch of sweetness on top.

Ingredients & Why They Work

The magic in this Pumpkin Cream Cheese Muffins Recipe comes from how these ingredients come together. Each one plays a big role, from creating moist, tender muffins to the luscious cream cheese filling and crumbly streusel topping. When shopping, look for fresh cream cheese and pure pumpkin puree for the best flavor.

  • Cream Cheese: Make sure it’s softened to room temperature so it blends smoothly for the filling.
  • Granulated Sugar: Sweetens both the filling and the muffin batter evenly.
  • Vanilla Extract: Adds a lovely depth of flavor to both the filling and the muffins.
  • Butter: Use softened butter for a creamy muffin base that’s rich and moist.
  • Brown Sugar: Adds warmth and moisture to the muffins, complementing the pumpkin flavor.
  • Eggs: They act as the binder and help with structure; room temperature eggs mix better.
  • Pumpkin Puree: For that authentic pumpkin taste; avoid pumpkin pie filling, which has extra sugar and spices.
  • Whole Milk: Gives extra richness, but you can substitute with any milk if needed.
  • All-Purpose Flour: Provides the perfect base for fluffy yet firm muffins.
  • Pumpkin Spice & Cinnamon: The quintessential autumn duo that infuses each bite with warming flavors.
  • Baking Powder & Baking Soda: These leavening agents work together to give lift and tenderness.
  • Salt: Just a pinch to balance the sweetness and enhance flavors.
  • Streusel Ingredients (Flour, Sugars, Butter, Cinnamon): Combined, they create that crisp topping that adds texture and charm.
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Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Make It Your Way

I love how versatile this Pumpkin Cream Cheese Muffins Recipe is — you can easily tweak it to suit your mood or dietary needs. I often swap the streusel topping for chopped nuts if I want to add a crunchy texture with a bit more bite. Feel free to get creative!

  • Dairy-Free Option: Swap butter with coconut oil and use dairy-free cream cheese for a vegan-friendly muffin that still packs flavor.
  • Spice it Up: Try adding a pinch of nutmeg or cloves if you want a spicier twist; I find this adds complexity without overpowering the pumpkin.
  • Less Sweet: Reduce the sugars slightly if you prefer a more subtle sweetness; the cream cheese filling helps keep muffins moist even with less sugar.
  • Extra Filling: Double the cream cheese mixture for extra gooey centers — works wonderfully if you’re making these for a special occasion.

Step-by-Step: How I Make Pumpkin Cream Cheese Muffins Recipe

Step 1: Preheat and Prep Your Muffin Tin

Start by preheating your oven to 375°F (190°C). Line a 12-count muffin tin with paper liners — this recipe makes exactly a dozen muffins. I like to use sturdy liners so they hold all the pumpkin batter and cream cheese filling without collapsing.

Step 2: Make the Cream Cheese Filling

Put your softened cream cheese into a bowl and stir it until it’s smooth and creamy, no lumps! Add the granulated sugar and vanilla extract, mixing until completely combined. This creamy filling is what makes these muffins so special, so don’t skip this step or use cold cream cheese — it won’t mix properly!

Step 3: Cream Butter and Sugars for the Muffins

In a medium bowl, use an electric mixer to cream together the softened butter, granulated sugar, and brown sugar until the mixture is light and fluffy. This step usually takes about 2-3 minutes and is key for that tender, moist crumb. If your butter isn’t soft enough, the texture can suffer, so plan ahead.

Step 4: Add Eggs, Pumpkin, and Vanilla

Beat in your eggs, one at a time, until fully combined. Then stir in the pumpkin puree and vanilla extract. Finally, add the milk and mix everything well. Make sure to scrape down the sides of your bowl about halfway through — it helps to evenly combine all the flavors and avoid any dense pockets.

Step 5: Whisk Dry Ingredients and Combine Gently

In a separate bowl, whisk together the flour, pumpkin spice, cinnamon, baking powder, baking soda, and salt. Gradually fold these dry ingredients into the wet pumpkin mixture using a spatula, stirring just until combined. Don’t overmix here or your muffins may turn out dense — it’s okay if a few lumps remain.

Step 6: Layer Batter and Cream Cheese Filling

Drop about 2 tablespoons of pumpkin batter into the bottom of each liner and use the back of your spoon to create a small well in the center. Spoon a heaping tablespoon of cream cheese filling into each crater, then cover with more pumpkin batter until the liners are about three-quarters full. This layering ensures every bite has that delicious cream cheese surprise.

Step 7: Make and Add the Streusel Topping

Whisk together the flour, light brown sugar, granulated sugar, and cinnamon for the streusel. Pour in melted butter and toss with your fingers or a fork until the mixture forms crumbly clumps. Evenly sprinkle this over the muffins, giving them that perfect crunchy, sweet top.

Step 8: Bake and Cool

Bake your muffins at 375°F (190°C) for 23-25 minutes. Look for golden edges and a toothpick inserted into the pumpkin muffin part coming out with dry crumbs (avoid piercing the cream cheese!). Once baked, let them cool in the pan for about 10 minutes before transferring to a wire rack. You’ll want these a bit warm so the flavors bloom but cool enough to hold their shape.

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Tips from My Kitchen

  • Room Temperature Ingredients: Always bring butter, cream cheese, and eggs to room temp — it helps everything blend smoothly for the best texture.
  • Don’t Overmix: Stir the batter until just combined; overmixing can make your muffins tough.
  • Spoon the Batter Carefully: Creating the cream cheese “nest” can feel fiddly, but using the back of a spoon for the well works like a charm.
  • Check Oven Temperature: Oven temps vary, so start checking at 22 minutes to avoid overbaking and drying out your muffins.

How to Serve Pumpkin Cream Cheese Muffins Recipe

The image shows a close-up of a muffin with three visible layers. The bottom layer is a soft, moist, orange-brown cake with a crumbly texture. In the middle, there is a smooth, creamy white filling. The top layer is a crumbly, light brown streusel topping with a rough texture. The muffin is slightly open to show the creamy filling inside and rests in a white paper cup on a metal cooling rack, all set against a white marbled surface with blurred warm-colored pumpkins and a dark background behind. Photo taken with an iphone --ar 4:5 --v 7

Garnishes

I usually serve these muffins plain because the cream cheese filling and streusel topping are standout enough. But if I’m feeling festive, a light dusting of powdered sugar or a drizzle of maple glaze really takes them up a notch. Freshly chopped pecans also make a lovely, nutty garnish to sprinkle on before baking.

Side Dishes

When I serve these muffins, I like pairing them with warm beverages like spiced chai or a good cup of coffee. For a brunch spread, they go beautifully alongside scrambled eggs, turkey bacon, or even a fresh fruit salad to balance the richness.

Creative Ways to Present

For holiday gatherings, I arrange these muffins in a festive basket lined with a cozy linen napkin and tuck in a few mini pumpkins for ambiance. Another fun idea I’ve tried is serving halved muffins with a scoop of cinnamon whipped cream for a decadent dessert option — guests always love the surprise element!

Make Ahead and Storage

Storing Leftovers

Once cooled completely, store leftover Pumpkin Cream Cheese Muffins in an airtight container in the refrigerator for up to 2 days. I’ve noticed the cream cheese filling keeps them moist, but they do taste best when enjoyed within the first couple of days.

Freezing

You can freeze these muffins after baking and cooling. Wrap each muffin individually in plastic wrap and place them in a freezer-safe container or ziplock bag. When I freeze them, they keep for up to 3 months without losing their texture or flavor.

Reheating

To reheat, I unwrap the muffin and heat it in the microwave for about 20-30 seconds or pop it in a 350°F oven for 5-7 minutes until warm. This method revives the soft pumpkin crumb and warm cream cheese center perfectly without drying out the muffin.

FAQs

  1. Can I use canned pumpkin pie filling instead of pumpkin puree?

    It’s best to use pure pumpkin puree rather than pumpkin pie filling. The pie filling already contains sugars and spices, which can alter the muffin’s sweetness and flavor balance. Using plain pumpkin puree gives you control over the spices and sweetness in your Pumpkin Cream Cheese Muffins Recipe.

  2. How do I prevent the cream cheese filling from leaking out?

    Make sure to create a well or crater in the pumpkin batter before spooning in the cream cheese filling, then gently cover it completely with more batter. Don’t overfill your muffin liners — aim for about three-quarters full — to prevent spilling during baking.

  3. Can I make this recipe gluten-free?

    Absolutely! Substitute the all-purpose flour with your favorite gluten-free flour blend, ideally one that includes xanthan gum for structure. Just keep in mind gluten-free flours sometimes change texture slightly, so watch the baking time accordingly.

  4. What’s the best way to store leftovers?

    Store cooled muffins in an airtight container in the fridge for up to two days. If you want to keep them longer, freezing is your best bet. Just be sure to wrap them individually to preserve freshness.

Final Thoughts

This Pumpkin Cream Cheese Muffins Recipe has quickly become one of my fall favorites — it’s cozy, comforting, and just the right amount of sweet with a creamy twist. If you’re looking for a new treat to share with family, or just want to make your mornings feel a little warmer, this recipe is a must-try. I can’t wait for you to bake them and see how they fill your kitchen with that incredible pumpkin spice aroma. Happy baking, friend!

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Pumpkin Cream Cheese Muffins Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.5 from 9 reviews
  • Author: Lily
  • Prep Time: 25 minutes
  • Cook Time: 25 minutes
  • Total Time: 50 minutes
  • Yield: 12 muffins
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American
  • Diet: Vegetarian

Description

These Pumpkin Cream Cheese Muffins combine moist, spiced pumpkin batter with a luscious cream cheese filling and a crunchy cinnamon streusel topping. Perfect for breakfast or a sweet snack during the fall season.


Ingredients

Cream Cheese Filling

  • 8 ounces (225 g) cream cheese softened to room temperature
  • ⅓ cup (65 g) granulated sugar
  • ½ teaspoon vanilla extract

Pumpkin Muffins

  • ¾ cup (165 g) butter softened
  • ½ cup (100 g) sugar
  • ¼ cup (50 g) brown sugar packed
  • 2 large eggs (room temperature preferred)
  • 1 cup (225 g) pumpkin puree
  • 1 ½ teaspoon vanilla extract
  • 2 Tablespoons (30 ml) whole milk
  • 1 ¼ cup (150 g) all-purpose flour
  • 2 teaspoons pumpkin spice
  • ½ teaspoon ground cinnamon
  • ¾ teaspoon baking powder
  • ¾ teaspoon baking soda
  • ½ teaspoon salt

Streusel

  • ½ cup (63 g) all-purpose flour
  • ⅓ cup (67 g) light brown sugar firmly packed
  • 1 Tablespoon granulated sugar
  • ¾ teaspoon ground cinnamon
  • 3 Tablespoons butter (salted or unsalted), melted


Instructions

  1. Preheat and Prepare: Preheat your oven to 375F (190C) and line a 12 count muffin tin with paper liners to get ready for baking.
  2. Make Cream Cheese Filling: In a mixing bowl, beat softened cream cheese until smooth. Add granulated sugar and vanilla extract, stirring until creamy and well combined. Set aside.
  3. Cream Butter and Sugars: Using an electric mixer, cream together softened butter, sugar, and brown sugar in a medium bowl until the mixture is light and fluffy.
  4. Add Eggs: Beat in the eggs until fully incorporated into the butter-sugar mixture.
  5. Add Pumpkin and Vanilla: Stir in pumpkin puree and vanilla extract, followed by the whole milk. Scrape the sides and bottom of the bowl to ensure even mixing.
  6. Mix Dry Ingredients: In a separate bowl, whisk together all-purpose flour, pumpkin spice, ground cinnamon, baking powder, baking soda, and salt to combine.
  7. Combine Wet and Dry: Gradually fold the dry ingredients into the wet mixture with a spatula until just combined. Avoid over-mixing to keep muffins tender.
  8. Fill Muffin Liners: Spoon about 2 tablespoons of pumpkin batter into each muffin liner. Use the back of a spoon to create a small crater in the center of each portion.
  9. Add Cream Cheese Layer: Drop a heaping tablespoon of cream cheese filling into each crater, then cover with more pumpkin batter until the liners are about ¾ full, fully covering the cream cheese.
  10. Prepare Streusel Topping: Whisk together flour, light brown sugar, granulated sugar, and cinnamon. Add melted butter and mix with your fingers or a fork until the mixture forms clumps.
  11. Top Muffins: Evenly sprinkle the streusel over the filled muffin liners.
  12. Bake: Bake in the preheated oven for 25 minutes or until muffin tops turn golden brown and a toothpick inserted into the batter (not the cream cheese) comes out with dry crumbs.
  13. Cool and Serve: Remove muffins from the oven and allow to cool before enjoying.

Notes

  • Store leftovers in an airtight container in the refrigerator for up to 2 days to maintain freshness.
  • Make sure the cream cheese is fully softened to avoid lumps in the filling.
  • Do not over-mix the batter to keep muffins light and tender.
  • Use paper liners for easy removal and cleanup.
  • You can substitute pumpkin spice with a mix of cinnamon, nutmeg, ginger, and cloves if unavailable.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 320 kcal
  • Sugar: 20 g
  • Sodium: 210 mg
  • Fat: 18 g
  • Saturated Fat: 10 g
  • Unsaturated Fat: 7 g
  • Trans Fat: 0 g
  • Carbohydrates: 35 g
  • Fiber: 2 g
  • Protein: 4 g
  • Cholesterol: 55 mg

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